SOFTWARE
The seventyGeneData R package contains the gene expression data for the van't Veer and Van de Vijver breast cancer cohorts. To install this package:

Use an uptodate version of R and Bioconductor, start an R session, and then execute the following:
source("http://www.bioconductor.org/biocLite.R")
biocLite("seventyGeneData")

To obtain the breastCancerNKI, which is suggested by our package, you can run the execute the following commands:
source("http://www.bioconductor.org/biocLite.R")
biocLite("breastCancerNKI")
The mammaPrintData R package contains the gene expression data for the Glas and Buyse breast cancer cohorts. To install this package:

Use an uptodate version of R and Bioconductor, start an R session, and then execute the following:
source("http://www.bioconductor.org/biocLite.R")
biocLite("mammaPrintData")
The switchBox R package contains functions to develop simple KTopScoringPair classifiers for binary data. The package was written in collaboration with Bahman Afsari and Wikum Dinalankara. To install it:

Use an uptodate version of R and Bioconductor, start an R session, and then execute the following:
source("http://www.bioconductor.org/biocLite.R")
biocLite("switchBox")
The matchBox R package contains functions to compute and plot CorrespondenceAtthe_Top curves. To install it:

Use an uptodate version of R and Bioconductor, start an R session, and then execute the following:
source("http://www.bioconductor.org/biocLite.R")
biocLite("matchBox")
The RTopper RBioconductor package is designed to perform Gene Set Analysis across multiple genomic platforms. To install it from Bioconductor you need:

Use an uptodate version of R and Bioconductor, start an R session, and then execute the following:
source("http://www.bioconductor.org/biocLite.R")
biocLite("RTopper")